This is a non-issue. Don't inject political drama into a historical video game when it isn't there already. Nobody involved with playing this game wants this kind of bad attention. We are celebrating the inclusion of developed Judaism and the diversity it will provide the same as we celebrated Sword of Islam when it was released for CK2. There was no real controversy. Please take some time to enjoy the title before displacing your strong emotional connection to current issues upon it.
I suppose after the Sunset Invasion, where Western Europe gets invaded by the Aztecs, making the Jews successful wasn't that much of a fantasy.
Although it is a bit amusing they came after literally every other religion in the area, including Zorastrianism and Ásatrú.